STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18215COG4102 Uncharacterized protein conserved in bacteria. (402 aa)    
Predicted Functional Partners:
RAM_18220
COG5267 Uncharacterized protein conserved in bacteria.
 
     0.961
RAM_18225
YVTN beta-propeller repeat-containing protein.
 
     0.603
RAM_18230
COG0726 Predicted xylanase/chitin deacetylase.
       0.519
RAM_03380
Hypothetical protein.
 
     0.478
RAM_06795
Hypothetical protein.
  
     0.472
RAM_01435
COG3584 Uncharacterized protein conserved in bacteria.
  
     0.463
RAM_18235
Hypothetical protein.
 
     0.443
RAM_21600
Peptidase S8 and S53 subtilisin kexin sedolisin; COG4934 Predicted protease.
  
     0.419
RAM_26040
COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
   
    0.402
RAM_45965
COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
   
    0.402
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.