STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18245Hypothetical protein. (250 aa)    
Predicted Functional Partners:
RAM_18250
PAS domain-containing sensor protein; COG2202 FOG: PAS/PAC domain.
 
   
 0.851
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
 
 
 0.805
CheR
COG1352 Methylase of chemotaxis methyl-accepting proteins.
 
     0.706
RAM_30220
Two-component system sensor kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.700
RsbV-3
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
 
 
 0.664
CheB
CheB methylesterase; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
     0.653
RAM_26205
Protein serine phosphatase with GAF(s) sensor(s); COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.633
RAM_39025
Serine/threonine phosphatase fused with REC signal receiver domain; COG0784 FOG: CheY-like receiver.
 
 
 0.627
RAM_38175
Serine/threonine phosphatase; COG2202 FOG: PAS/PAC domain.
 
 
 0.606
RAM_30200
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
 
 
 0.590
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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