STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18250PAS domain-containing sensor protein; COG2202 FOG: PAS/PAC domain. (122 aa)    
Predicted Functional Partners:
CheR
COG1352 Methylase of chemotaxis methyl-accepting proteins.
     0.975
CheB
CheB methylesterase; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
  
 0.954
CheB-3
Chemotaxis-specific methylesterase CheB; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
  
 0.877
RAM_18245
Hypothetical protein.
 
     0.849
RAM_33375
Hypothetical protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
  
 0.829
RAM_23045
Two-component system sensor kinase; COG2770 FOG: HAMP domain.
 
 
 0.822
KorA
COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
   
   0.745
KamA
COG1509 Lysine 2,3-aminomutase.
    
   0.724
CheB-2
Chemotaxis-specific methylesterase CheB; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
  
 0.720
RAM_30220
Two-component system sensor kinase; COG2202 FOG: PAS/PAC domain.
 
  
 0.716
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.