STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CynTCOG0288 Carbonic anhydrase. (182 aa)    
Predicted Functional Partners:
CynT-2
COG0288 Carbonic anhydrase.
  
  
 
0.922
RAM_11280
Carbonic anhydrase fused with sulfate permease; COG0659 Sulfate permease and related transporters (MFS superfamily).
  
 
 0.921
RAM_11285
Carbonic anhydrase fused with sulfate permease; COG0659 Sulfate permease and related transporters (MFS superfamily).
  
 
 0.921
RAM_18305
Epoxide hydrolase MesT; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.693
NirC
COG2116 Formate/nitrite family of transporters.
  
  
 0.627
RAM_18295
COG0686 Alanine dehydrogenase.
       0.569
RAM_30750
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.520
RAM_18310
COG1309 Transcriptional regulator.
       0.499
RAM_08875
COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.
    
 
 0.439
RAM_44950
COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.
    
 
 0.439
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.