STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CynTCOG0288 Carbonic anhydrase. (182 aa)    
Predicted Functional Partners:
RAM_11280
Carbonic anhydrase fused with sulfate permease; COG0659 Sulfate permease and related transporters (MFS superfamily).
  
 
 0.923
RAM_11285
Carbonic anhydrase fused with sulfate permease; COG0659 Sulfate permease and related transporters (MFS superfamily).
  
 
 0.923
CynT-2
COG0288 Carbonic anhydrase.
  
  
 
0.922
RAM_18305
Epoxide hydrolase MesT; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.693
NirC
COG2116 Formate/nitrite family of transporters.
  
  
 0.596
RAM_18295
COG0686 Alanine dehydrogenase.
     
 0.579
RAM_30750
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.501
RAM_18310
COG1309 Transcriptional regulator.
       0.499
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.445
Apt
COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.
   
  
 0.445
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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