STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18325Cupin 2 domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain. (155 aa)    
Predicted Functional Partners:
RAM_29110
Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
   0.783
RAM_33410
Cupin domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
   0.749
RAM_18320
Alpha/beta hydrolase; COG0657 Esterase/lipase.
  
    0.701
RAM_28020
Cupin domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
   0.618
RAM_22760
Glycosyl hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase.
 
     0.604
RAM_42015
Cupin 2 domain-containing protein; COG0662 Mannose-6-phosphate isomerase.
  
     0.580
RAM_17355
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.562
RAM_17980
Hypothetical protein.
  
     0.503
RAM_29360
COG0425 Predicted redox protein, regulator of disulfide bond formation.
 
     0.481
RAM_18315
COG1309 Transcriptional regulator.
  
    0.473
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.