STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18355Hypothetical protein; COG2319 FOG: WD40 repeat. (1229 aa)    
Predicted Functional Partners:
RAM_30580
Hypothetical protein.
    
 0.757
RAM_23745
COG0522 Ribosomal protein S4 and related proteins.
    
 0.705
RAM_25745
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 0.683
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.648
RAM_25740
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 0.602
AcuC
Acetoin utilization protein AcuC; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
    
 0.558
RAM_17925
Helicase; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
 
 
 0.551
RAM_04510
COG2453 Predicted protein-tyrosine phosphatase.
   
 0.547
RAM_10300
COG3620 Predicted transcriptional regulator with C-terminal CBS domains.
 
 0.537
RAM_41860
TPR repeat-containing protein; COG3903 Predicted ATPase.
  
 0.537
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.