STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18410COG3409 Putative peptidoglycan-binding domain-containing protein. (320 aa)    
Predicted Functional Partners:
RAM_29855
Transposase IS4 family protein.
  
     0.591
RAM_05320
Hypothetical protein.
  
   
 0.590
RAM_15640
Hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
    0.586
RAM_26285
Hypothetical protein.
  
    0.581
RAM_10870
UBA/ThiF-type NAD/FAD binding protein; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
  
     0.537
RAM_31450
Hypothetical protein.
  
     0.534
RAM_18730
Endoglucanase E-like hydrolase; COG2755 Lysophospholipase L1 and related esterases.
 
     0.513
RAM_38210
Hypothetical protein.
  
     0.513
RAM_44005
Lipoprotein.
 
     0.492
RAM_24575
Hypothetical protein; COG0372 Citrate synthase.
  
     0.491
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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