STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18425LuxR family transcriptional regulator fused with ATPase domain; COG3899 Predicted ATPase. (397 aa)    
Predicted Functional Partners:
RAM_41695
LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
     0.609
RAM_18810
COG4585 Signal transduction histidine kinase.
  
   0.577
RAM_27990
COG4585 Signal transduction histidine kinase.
  
   0.572
RAM_05000
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
     0.545
RAM_45820
COG4585 Signal transduction histidine kinase.
  
   0.538
RAM_24570
LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
     0.536
RAM_18055
COG4585 Signal transduction histidine kinase.
  
   0.525
RAM_33360
COG4585 Signal transduction histidine kinase.
  
   0.521
RAM_32555
COG4585 Signal transduction histidine kinase.
  
   0.514
RAM_21595
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
     0.505
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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