STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18480COG0842 ABC-type multidrug transport system, permease component. (281 aa)    
Predicted Functional Partners:
RAM_18475
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.958
RAM_43400
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.830
RAM_27560
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.827
RAM_18485
COG2192 Predicted carbamoyl transferase, NodU family.
       0.773
RAM_18470
Hypothetical protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
       0.760
RAM_36250
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.675
RAM_30415
COG0842 ABC-type multidrug transport system, permease component.
  
  
  0.556
RAM_10390
COG0842 ABC-type multidrug transport system, permease component.
  
  
  0.516
RAM_18465
COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III.
       0.515
RAM_00215
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.510
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.