STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18485COG2192 Predicted carbamoyl transferase, NodU family. (621 aa)    
Predicted Functional Partners:
RAM_18475
COG1131 ABC-type multidrug transport system, ATPase component.
       0.773
RAM_18480
COG0842 ABC-type multidrug transport system, permease component.
       0.773
RAM_18470
Hypothetical protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
       0.762
RAM_21715
HAD family hydrolase; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
    0.721
RAM_21755
D-beta-D-heptose 7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
   
 0.657
RAM_21710
Glycosyl transferase; COG0859 ADP-heptose:LPS heptosyltransferase.
 
  
 0.633
RAM_21745
Glycosyl transferase; COG0859 ADP-heptose:LPS heptosyltransferase.
 
  
 0.620
RAM_21780
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
    0.610
RAM_21785
COG1216 Predicted glycosyltransferases.
 
    0.588
RAM_18460
Hypothetical protein; COG0439 Biotin carboxylase.
 
    0.586
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.