STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18490Polymorphic outer membrane protein. (425 aa)    
Predicted Functional Partners:
RAM_21090
Hypothetical protein.
  
     0.765
RAM_06845
Hypothetical protein.
  
     0.743
RAM_01640
Hypothetical protein; COG1361 S-layer domain.
  
     0.733
FtsK-4
Cell division FtsK/SpoIIIE; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
 
 0.683
RAM_01855
TraJ; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
 
 0.675
RAM_27155
Phage integrase family protein; COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.664
RAM_17480
Hypothetical protein.
  
 
   0.652
RAM_41885
LuxR family transcriptional regulator fused with ATPase domain; COG3899 Predicted ATPase.
 
     0.646
RAM_17750
LuxR family transcriptional regulator; COG3899 Predicted ATPase.
 
     0.632
RAM_41160
COG3947 Response regulator containing CheY-like receiver and SARP domains.
  
     0.623
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.