STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18500Hypothetical protein. (389 aa)    
Predicted Functional Partners:
RAM_18495
Hypothetical protein.
       0.773
FabH-2
COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III.
  
    0.579
RAM_45480
Carbamoyl phosphate synthase-like protein; COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase).
 
 
   0.548
RAM_41800
Surface protein.
  
     0.537
RAM_20630
Hypothetical protein.
 
    0.518
RAM_10870
UBA/ThiF-type NAD/FAD binding protein; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
 
 0.511
RAM_10220
Peptidase M48; COG0501 Zn-dependent protease with chaperone function.
 
 
 
 0.486
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
  
 0.486
RAM_34185
Probable chaperone protein; COG0326 Molecular chaperone, HSP90 family.
  
 0.486
RAM_37535
Hypothetical protein.
  
     0.482
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.