STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GalA-6Alpha-galactosidase. (651 aa)    
Predicted Functional Partners:
Neu
COG4409 Neuraminidase (sialidase).
     
  0.900
LacZ-7
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.860
LacZ
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.854
LacZ-5
COG3250 Beta-galactosidase/beta-glucuronidase.
  
  
  0.826
LacZ-6
COG1874 Beta-galactosidase.
  
  
  0.826
LacZ-3
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.782
LacZ-4
COG3250 Beta-galactosidase/beta-glucuronidase.
  
  
  0.749
NagZ
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
  
  
  0.711
RAM_31120
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
  
  
  0.700
RAM_25800
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
  
  
  0.698
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.