STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18640Glycoside hydrolase. (1104 aa)    
Predicted Functional Partners:
RAM_18645
Hydrolase.
 
     0.853
RAM_26020
Rhamnosidase.
 
     0.768
RAM_29495
alpha-L-rhamnosidase; COG1049 Aconitase B.
 
     0.765
RAM_29575
Rhamnosidase.
 
     0.764
RAM_29540
Coagulation factor 5/8 type domain protein.
 
     0.755
AraA
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.752
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
  
 
 0.741
RAM_18900
Glycoside hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase.
 
    0.700
LacZ-7
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
    0.685
LacZ
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
    0.677
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.