STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18685COG0640 Predicted transcriptional regulators. (317 aa)    
Predicted Functional Partners:
RAM_31725
ArsR family transcriptional regulator.
  
     0.753
RAM_27590
COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase.
  
     0.614
RAM_27580
Glycosyl transferase.
  
     0.582
RAM_23845
Hypothetical protein.
  
     0.581
RAM_43190
Hypothetical protein.
  
     0.557
RAM_27595
COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase.
  
     0.547
RAM_11810
Hypothetical protein.
  
     0.544
RAM_03265
COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase.
  
     0.539
RAM_38200
Hypothetical protein.
  
     0.514
RAM_44990
COG1396 Predicted transcriptional regulators.
  
    0.495
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.