STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18705Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases. (258 aa)    
Predicted Functional Partners:
RAM_41515
COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
   0.876
RAM_18700
Hypothetical protein.
       0.794
RAM_18715
Hypothetical protein.
 
 
   0.792
RAM_21480
exo-poly-alpha-D-galacturonosidase precursor; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
   0.775
RAM_22600
Pectinesterase; COG4677 Pectin methylesterase.
 
   
 0.770
RAM_40200
Glycoside hydrolase; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
   0.769
RAM_07775
COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
 
    0.750
RAM_38095
COG2351 Transthyretin-like protein.
 
 
 0.715
RAM_07675
Hypothetical protein; COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
 
    0.711
AguA
COG3661 Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
    0.708
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.