STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18715Hypothetical protein. (984 aa)    
Predicted Functional Partners:
RAM_18710
COG3867 Arabinogalactan endo-1,4-beta-galactosidase.
 
     0.835
RAM_18705
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
   0.800
RAM_38100
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
  
   0.778
RAM_38145
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
  
   0.778
RAM_19080
Glycoside hydrolase; COG4124 Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.747
AguA
COG3661 Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
  
   
 0.737
RAM_20365
COG3693 Beta-1,4-xylanase.
 
   
 0.722
RAM_41515
COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
 
 0.720
XynA-5
Glycosyl hydrolase/beta-1,4-xylanase; COG3693 Beta-1,4-xylanase.
 
   
 0.713
AbnA-2
Arabinan endo-1,5-alpha-L-arabinosidase; COG3507 Beta-xylosidase.
 
   
 0.710
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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