STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AbnAArabinan endo-1,5-alpha-L-arabinosidase; COG3507 Beta-xylosidase. (320 aa)    
Predicted Functional Partners:
RAM_18715
Hypothetical protein.
 
   
 0.702
RAM_38140
Hypothetical protein.
  
  
 0.699
AbfA-9
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
 
  
 0.693
RAM_18710
COG3867 Arabinogalactan endo-1,4-beta-galactosidase.
 
  
 0.679
XynA-4
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
 
   
 0.673
XynA-5
Glycosyl hydrolase/beta-1,4-xylanase; COG3693 Beta-1,4-xylanase.
 
   
 0.672
RAM_38100
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
   
 0.664
XynA-6
Glycosyl hydrolase/beta-1,4-xylanase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
   
 0.660
RAM_38145
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
   
 0.659
RAM_16715
Hypothetical protein; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.656
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.