STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18800Hypothetical protein. (246 aa)    
Predicted Functional Partners:
MprB
COG0642 Signal transduction histidine kinase.
       0.518
MprA
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.518
RAM_17365
Extracellular neutral protease.
  
     0.452
RAM_18805
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
    0.450
RAM_05285
Zinc metalloprotease; Extracellular zinc metalloprotease.
  
     0.436
RAM_18810
COG4585 Signal transduction histidine kinase.
       0.435
RAM_18785
Oxidoreductase; COG4097 Predicted ferric reductase.
       0.428
RAM_05275
COG3227 Zinc metalloprotease (elastase).
  
     0.426
RAM_14430
Metalloprotease.
  
     0.425
RAM_18780
COG3976 Uncharacterized protein conserved in bacteria.
       0.413
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.