STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18900Glycoside hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase. (937 aa)    
Predicted Functional Partners:
RAM_07675
Hypothetical protein; COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
 
     0.738
GalK
COG0153 Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.694
RAM_29495
alpha-L-rhamnosidase; COG1049 Aconitase B.
 
 
 0.694
RAM_18640
Glycoside hydrolase.
 
    0.692
RAM_26020
Rhamnosidase.
 
 
 0.667
RAM_29575
Rhamnosidase.
 
 
 0.651
RAM_18905
Glucose dehydrogenase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
     
 0.621
RAM_29540
Coagulation factor 5/8 type domain protein.
 
    0.618
RAM_18645
Hydrolase.
 
 
 0.617
RAM_20310
Large protein.
 
 
   0.613
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.