STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18910Hypothetical protein; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases. (74 aa)    
Predicted Functional Partners:
RAM_18895
COG1846 Transcriptional regulators.
 
     0.732
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.512
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.512
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.512
RAM_18915
Cupin 2 domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
    0.504
RAM_14620
Pyridoxamine 5'-phosphate oxidase.
  
    0.481
PcaC-3
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
  
    0.473
Mmr-2
MFS transporter methylenomycin A resistance protein; COG0477 Permeases of the major facilitator superfamily.
       0.466
RAM_25875
COG1846 Transcriptional regulators.
 
     0.433
RAM_23195
Hypothetical protein; COG3291 FOG: PKD repeat.
  
     0.419
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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