STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18915Cupin 2 domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain. (135 aa)    
Predicted Functional Partners:
PcaC-3
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
   
 0.968
Mmr-2
MFS transporter methylenomycin A resistance protein; COG0477 Permeases of the major facilitator superfamily.
       0.738
RAM_29485
Hypothetical protein; COG0716 Flavodoxins.
 
     0.711
RAM_18980
Hypothetical protein.
 
     0.683
RAM_18930
COG1396 Predicted transcriptional regulators.
 
    0.602
RAM_18910
Hypothetical protein; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
    0.504
RAM_26400
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
   
 0.468
RAM_29445
COG4334 Uncharacterized protein conserved in bacteria.
 
     0.457
PcaC-4
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
   
 0.433
PcaC-6
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
   
 0.412
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.