STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18980Hypothetical protein. (143 aa)    
Predicted Functional Partners:
RAM_18975
Hypothetical protein.
       0.779
RAM_18915
Cupin 2 domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
     0.681
RAM_29480
Cupin 2 domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
     0.673
RAM_32870
Cupin 2 domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
     0.641
RAM_29485
Hypothetical protein; COG0716 Flavodoxins.
 
     0.606
RAM_05080
Alpha/beta hydrolase-related protein; COG1073 Hydrolases of the alpha/beta superfamily.
 
    0.554
RAM_18970
COG1396 Predicted transcriptional regulators.
       0.544
AraJ-4
COG2814 Arabinose efflux permease.
 
     0.445
AraJ-5
COG2814 Arabinose efflux permease.
 
     0.428
AraJ
COG2814 Arabinose efflux permease.
 
     0.402
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.