STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19025Hypothetical protein; COG0517 FOG: CBS domain. (172 aa)    
Predicted Functional Partners:
RAM_19030
Arsenic-transport integral membrane protein; COG1055 Na+/H+ antiporter NhaD and related arsenite permeases.
 
    0.945
RAM_29375
Arsenic-transport integral membrane protein; COG1055 Na+/H+ antiporter NhaD and related arsenite permeases.
 
    0.784
RAM_33765
ArsB/NhaD superfamily permease; COG1055 Na+/H+ antiporter NhaD and related arsenite permeases.
 
    0.784
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.705
RAM_19480
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
  
    0.607
RAM_36755
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
  
    0.607
RAM_19035
Esterase/lipase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
       0.527
RAM_19020
Hypothetical protein.
       0.495
RAM_01655
Lipoprotein; COG1686 D-alanyl-D-alanine carboxypeptidase.
 
    0.459
RAM_04935
Hypothetical protein.
  
     0.431
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.