STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19035Esterase/lipase; COG3509 Poly(3-hydroxybutyrate) depolymerase. (301 aa)    
Predicted Functional Partners:
AbfA-10
alpha-N-arabinofuranosidase.
 
 
   0.788
AbfA-12
alpha-N-arabinofuranosidase.
 
 
   0.780
AbfA-2
alpha-N-arabinofuranosidase; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
 
   0.771
RAM_16710
Xylosidase/glycosyl hydrolase; COG3507 Beta-xylosidase.
  
     0.708
RAM_26385
Endo-1,4-beta-glucanase; COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A).
  
     0.691
RAM_20315
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
     0.685
RAM_16765
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
     0.675
XynA-2
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
 
 
 0.668
RAM_16730
Glycoside hydrolase; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
     0.668
RAM_20045
Glycoside hydrolase; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.668
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.