STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19065COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily. (320 aa)    
Predicted Functional Partners:
RAM_19055
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.967
RAM_00345
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.941
RAM_19050
Dipeptide/oligopeptide ABC transporter periplasmic protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 
 0.933
RAM_23710
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.926
RAM_45660
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.916
RAM_19060
Oligopeptide/dipeptide ABC transporter ATPase/permease; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
0.909
RAM_42985
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.907
RAM_42075
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.905
RAM_41235
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.900
RAM_42990
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.881
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.