STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19070Beta-mannosidase; COG3250 Beta-galactosidase/beta-glucuronidase. (814 aa)    
Predicted Functional Partners:
LacI-9
COG1609 Transcriptional regulators.
 
     0.841
RAM_19050
Dipeptide/oligopeptide ABC transporter periplasmic protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
     0.625
RAM_19060
Oligopeptide/dipeptide ABC transporter ATPase/permease; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
     0.564
RAM_19055
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
     0.537
RAM_17345
COG3533 Uncharacterized protein conserved in bacteria.
 
     0.516
RAM_19065
COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
       0.489
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
 
  
 0.485
AbfA-11
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
 
   
 0.463
RAM_19045
COG1940 Transcriptional regulator/sugar kinase.
 
   
 0.456
RAM_31120
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
 
 
 0.450
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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