STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LacI-9COG1609 Transcriptional regulators. (282 aa)    
Predicted Functional Partners:
RAM_19070
Beta-mannosidase; COG3250 Beta-galactosidase/beta-glucuronidase.
 
   
 0.839
LacI-10
COG1609 Transcriptional regulators.
  
     0.767
LacI-5
COG1609 Transcriptional regulators.
  
     0.762
LacI-22
COG1609 Transcriptional regulators.
  
     0.759
LacI-20
COG1609 Transcriptional regulators.
  
     0.681
LacI-16
COG1609 Transcriptional regulators.
  
     0.614
LacI-6
COG1349 Transcriptional regulators of sugar metabolism.
  
   
 0.573
RAM_19060
Oligopeptide/dipeptide ABC transporter ATPase/permease; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
       0.499
RAM_19050
Dipeptide/oligopeptide ABC transporter periplasmic protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
  
    0.493
RAM_28930
COG1609 Transcriptional regulators.
  
     0.486
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.