STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GalA-7COG3345 Alpha-galactosidase. (723 aa)    
Predicted Functional Partners:
Neu
COG4409 Neuraminidase (sialidase).
     
  0.900
LacZ-4
COG3250 Beta-galactosidase/beta-glucuronidase.
 
 
 0.803
MalZ-4
Alpha-glucosidase; COG0366 Glycosidases.
 
 
 0.772
MalZ-2
Alpha-glucosidase; COG0366 Glycosidases.
 
 
 0.770
MalZ-3
Alpha-glucosidase; COG0366 Glycosidases.
 
 
 0.766
LacZ-5
COG3250 Beta-galactosidase/beta-glucuronidase.
 
 
 0.754
LacZ-3
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.730
GalA-9
COG3345 Alpha-galactosidase.
  
  
 
0.728
GalA-3
COG3345 Alpha-galactosidase.
  
  
 
0.727
LacZ-6
COG1874 Beta-galactosidase.
 
  
 0.727
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.