STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19345LamG domain-containing protein receptor. (2230 aa)    
Predicted Functional Partners:
RAM_19350
COG3209 Rhs family protein.
 
    0.920
RAM_37500
Hypothetical protein; COG3451 Type IV secretory pathway, VirB4 components.
  
  
 0.845
RAM_26010
Hypothetical protein; COG0438 Glycosyltransferase.
  
     0.727
HemN
COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases.
  
     0.704
RAM_22335
Hypothetical protein.
  
    0.662
RAM_15995
ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.648
RAM_28140
COG3209 Rhs family protein.
  
    0.637
RAM_10220
Peptidase M48; COG0501 Zn-dependent protease with chaperone function.
  
   
 0.615
RAM_42180
Integral membrane protein.
  
     0.611
RAM_39570
Large ATP-binding protein; COG5635 Predicted NTPase (NACHT family).
  
     0.605
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.