STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19350COG3209 Rhs family protein. (1858 aa)    
Predicted Functional Partners:
RAM_19345
LamG domain-containing protein receptor.
 
    0.921
RAM_28145
LamG domain-containing protein; COG3209 Rhs family protein.
 
  
 0.768
RAM_20345
Hypothetical protein.
  
     0.642
RAM_23500
COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
     0.599
RAM_28370
Hypothetical protein.
 
    0.504
RAM_06675
Phosphotransferase.
  
     0.492
RAM_14950
COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
 
    0.492
RAM_30870
Hypothetical protein.
 
 
 0.472
RAM_23195
Hypothetical protein; COG3291 FOG: PKD repeat.
  
     0.438
RAM_05540
CAAX amino terminal protease; COG1266 Predicted metal-dependent membrane protease.
  
     0.418
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.