STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19355COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (312 aa)    
Predicted Functional Partners:
RAM_30255
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
   0.663
Por
Protochlorophyllide reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
   0.662
RAM_19360
Helix-turn-helix domain-containing protein; COG1396 Predicted transcriptional regulators.
 
     0.626
RAM_19365
COG3293 Transposase and inactivated derivatives.
 
     0.599
RAM_31905
Short-chain dehydrogenase/reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.574
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.541
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.541
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.541
RAM_10925
Oxidoreductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
   0.526
RAM_19375
Hypothetical protein; COG1396 Predicted transcriptional regulators.
 
     0.507
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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