STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19375Hypothetical protein; COG1396 Predicted transcriptional regulators. (92 aa)    
Predicted Functional Partners:
RAM_19360
Helix-turn-helix domain-containing protein; COG1396 Predicted transcriptional regulators.
     0.852
RAM_19370
IS4 family transposase; COG3293 Transposase and inactivated derivatives.
       0.773
RAM_04730
COG1309 Transcriptional regulator.
  
     0.583
RAM_31910
COG1396 Predicted transcriptional regulators.
  
     0.550
RAM_18135
COG1396 Predicted transcriptional regulators.
  
     0.508
RAM_19355
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.507
RAM_04505
COG4758 Predicted membrane protein.
  
     0.498
RAM_07230
COG1309 Transcriptional regulator.
  
     0.497
RAM_07295
COG1309 Transcriptional regulator.
  
     0.468
RAM_28570
Hypothetical protein.
  
     0.458
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.