STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PaaG-13COG1024 Enoyl-CoA hydratase/carnithine racemase. (273 aa)    
Predicted Functional Partners:
RAM_19495
COG1960 Acyl-CoA dehydrogenases.
  
 0.863
PaaG-12
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
   
 0.779
PaaG-20
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
   
 0.760
RAM_19500
acyl-CoA synthetase, long-chain fatty acid:CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 
 0.699
RAM_19520
COG1960 Acyl-CoA dehydrogenases.
  
 0.641
RAM_19510
Hypothetical protein; COG2030 Acyl dehydratase.
  
 0.636
TesB-2
COG1946 Acyl-CoA thioesterase.
  
 
 0.610
PaaG-14
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
   
0.588
RAM_20005
Polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.584
RAM_36880
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
  
 0.584
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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