STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PaaG-13COG1024 Enoyl-CoA hydratase/carnithine racemase. (273 aa)    
Predicted Functional Partners:
RAM_19495
COG1960 Acyl-CoA dehydrogenases.
  
 0.875
PaaG-12
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
   
 0.780
PaaG-20
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
   
 0.762
RAM_19500
acyl-CoA synthetase, long-chain fatty acid:CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 
 0.731
RAM_19520
COG1960 Acyl-CoA dehydrogenases.
  
 0.670
RAM_19510
Hypothetical protein; COG2030 Acyl dehydratase.
  
 0.636
PaaG-14
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
   
0.592
RifA
Rifamycin polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.568
TesB-2
COG1946 Acyl-CoA thioesterase.
  
 
 0.568
RAM_36880
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
  
 0.567
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.