STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PaaG-14COG1024 Enoyl-CoA hydratase/carnithine racemase. (258 aa)    
Predicted Functional Partners:
RAM_19510
Hypothetical protein; COG2030 Acyl dehydratase.
  
 0.854
RAM_19520
COG1960 Acyl-CoA dehydrogenases.
  
 0.829
PaaG
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
   
 0.782
TesB-2
COG1946 Acyl-CoA thioesterase.
  
 
 0.759
RAM_19525
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
  
  0.713
RAM_19495
COG1960 Acyl-CoA dehydrogenases.
  
 0.658
RAM_36880
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
 0.633
RAM_12990
Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase.
  
 0.589
PaaG-13
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
   
0.588
RAM_20005
Polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.584
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.