STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19530HNH endonuclease; COG3183 Predicted restriction endonuclease. (407 aa)    
Predicted Functional Partners:
RAM_08445
Hypothetical protein.
  
     0.687
RAM_19525
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
       0.519
RAM_19520
COG1960 Acyl-CoA dehydrogenases.
       0.465
RAM_19510
Hypothetical protein; COG2030 Acyl dehydratase.
       0.435
PaaG-14
COG1024 Enoyl-CoA hydratase/carnithine racemase.
       0.435
RAM_10780
TraG/VirD4-like conjugation protein involved in type IV secretion; COG1643 HrpA-like helicases.
 
 
 
 0.428
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.