STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PrpD2-methylcitrate dehydratase; COG2079 Uncharacterized protein involved in propionate catabolism. (456 aa)    
Predicted Functional Partners:
GltA-2
COG0372 Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.886
BioW
6-carboxyhexanoate-CoA ligase; COG1042 Acyl-CoA synthetase (NDP forming).
 
     0.843
RAM_19570
COG1960 Acyl-CoA dehydrogenases.
  
  
 0.791
GabD
Succinate-semialdehyde dehydrogenase (NADP+); COG1012 NAD-dependent aldehyde dehydrogenases.
  
  
 0.783
RAM_08040
Carboxyvinyl-carboxyphosphonate phosphorylmutase; COG2513 PEP phosphonomutase and related enzymes.
 
  
 0.729
RAM_16175
Carboxyvinyl-carboxyphosphonate phosphorylmutase; COG2513 PEP phosphonomutase and related enzymes.
 
  
 0.728
RAM_08315
COG1396 Predicted transcriptional regulators.
  
  
 0.708
RAM_32535
COG2513 PEP phosphonomutase and related enzymes.
 
  
 0.696
GltA
COG0372 Citrate synthase.
  
  
 0.693
GltA-3
COG0372 Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.693
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.