STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PaaG-16COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)    
Predicted Functional Partners:
PaaH
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.988
PaaH-2
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.988
PaaH-3
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.988
PaaH-6
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.988
PaaH-5
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.976
PaaH-4
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.967
FadB-3
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
0.937
Qor-3
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
  0.908
BadH
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
  0.800
RAM_19660
COG1680 Beta-lactamase class C and other penicillin binding proteins.
       0.730
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.