STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PaaG-16COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)    
Predicted Functional Partners:
PaaH
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.986
PaaH-2
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.986
PaaH-3
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.986
PaaH-6
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.986
PaaH-5
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.972
PaaH-4
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.962
FadB-3
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
0.926
Qor-3
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
  0.908
BadH
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 0.789
RAM_19660
COG1680 Beta-lactamase class C and other penicillin binding proteins.
       0.730
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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