STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19705Dehydratase; COG2030 Acyl dehydratase. (153 aa)    
Predicted Functional Partners:
RAM_17215
COG1960 Acyl-CoA dehydrogenases.
 
 0.955
RAM_17175
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.946
RAM_17240
COG1960 Acyl-CoA dehydrogenases.
 
 0.946
RAM_15975
Nodulation protein N; COG2030 Acyl dehydratase.
  
  
 
0.903
RAM_19700
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
 
 0.863
RAM_19695
Hypothetical protein; COG0183 Acetyl-CoA acetyltransferase.
 
 
 0.859
RAM_19685
COG1960 Acyl-CoA dehydrogenases.
 
 0.792
FadD-5
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
     
 0.765
RAM_19710
COG2186 Transcriptional regulators.
       0.757
RAM_19715
COG1960 Acyl-CoA dehydrogenases.
  
 0.751
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.