STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19730long-chain-fatty-acyl-CoA reductase. (464 aa)    
Predicted Functional Partners:
RAM_19725
Hypothetical protein.
  
 
 0.870
PaaG-18
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
  0.717
Acd-7
COG1960 Acyl-CoA dehydrogenases.
  
 
  0.714
Acd-8
COG1960 Acyl-CoA dehydrogenases.
  
 
  0.714
kgd
Alpha-ketoglutarate decarboxylase; COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
  
 0.590
RAM_19720
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
       0.523
RAM_30220
Two-component system sensor kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.470
RAM_27380
Hypothetical protein.
  
  
 0.459
RAM_36880
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
  
 0.459
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.455
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.