STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19765fatty-acyl-CoA synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (522 aa)    
Predicted Functional Partners:
RAM_12320
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.942
RAM_12965
COG2124 Cytochrome P450.
  
  0.939
RAM_12315
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.918
RAM_13005
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
  
 
0.908
Mcr
COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
    
 0.901
Mcr-2
COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
    
 0.901
Mcr-3
COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
    
 0.901
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 0.875
RAM_19770
Pyridoxamine 5'-phosphate oxidase; COG3467 Predicted flavin-nucleotide-binding protein.
 
     0.808
RifB
COG3321 Polyketide synthase modules and related proteins.
  
 0.807
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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