STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19770Pyridoxamine 5'-phosphate oxidase; COG3467 Predicted flavin-nucleotide-binding protein. (168 aa)    
Predicted Functional Partners:
RAM_19765
fatty-acyl-CoA synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
     0.808
RAM_19775
COG1309 Transcriptional regulator.
 
     0.643
RAM_12770
Hypothetical protein.
 
     0.456
RAM_12995
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
     0.434
RAM_42905
COG3662 Uncharacterized protein conserved in bacteria.
  
     0.428
RAM_40320
Hypothetical protein.
   
    0.422
RAM_12990
Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase.
 
     0.419
Fer-2
COG1141 Ferredoxin.
 
     0.416
RAM_46530
TetR family transcriptional regulator; COG3226 Uncharacterized protein conserved in bacteria.
  
     0.406
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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