STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19820Hypothetical protein. (263 aa)    
Predicted Functional Partners:
RAM_20955
Large ATP-binding protein; COG5635 Predicted NTPase (NACHT family).
 
     0.692
RAM_19825
Phthalate 4,5-dioxygenase; COG2258 Uncharacterized protein conserved in bacteria.
       0.685
RAM_14625
MutT/NUDIX family protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.
  
     0.618
RAM_36790
Hypothetical protein; COG2030 Acyl dehydratase.
  
     0.584
RAM_19590
Amidohydrolase; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
     0.575
RAM_19830
COG1940 Transcriptional regulator/sugar kinase.
  
    0.562
RAM_17535
Hypothetical protein.
  
     0.557
RAM_11750
Hypothetical protein.
  
     0.553
RAM_31475
Hypothetical protein; COG1073 Hydrolases of the alpha/beta superfamily.
  
     0.512
RAM_39570
Large ATP-binding protein; COG5635 Predicted NTPase (NACHT family).
 
     0.497
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.