STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19835Hypothetical protein. (410 aa)    
Predicted Functional Partners:
RAM_19830
COG1940 Transcriptional regulator/sugar kinase.
 
     0.633
RAM_19825
Phthalate 4,5-dioxygenase; COG2258 Uncharacterized protein conserved in bacteria.
 
     0.553
MetY
COG2873 O-acetylhomoserine sulfhydrylase.
 
 
    0.491
MetY-2
COG2873 O-acetylhomoserine sulfhydrylase.
 
 
    0.491
RAM_12980
tRNA-processing ribonuclease BN; COG1295 Predicted membrane protein.
 
     0.458
Fpr
ferredoxin--NADP+ reductase; COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
  
  
 0.445
FadH
NADPH-dependent 2,4-dienoyl-CoA reductase; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
  
 0.445
GltD
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
  
  
 0.445
Fpr-2
ferredoxin--NADP+ reductase; COG1146 Ferredoxin.
  
  
 0.445
GltD-2
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
  
  
 0.445
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.