STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19855COG3387 Glucoamylase and related glycosyl hydrolases. (604 aa)    
Predicted Functional Partners:
OtsA
COG0380 Trehalose-6-phosphate synthase.
 
   
 0.753
RAM_13195
Trehalose synthase; COG0366 Glycosidases.
 
   
 0.691
RAM_19860
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
       0.538
RAM_19845
Hypothetical protein.
       0.536
RAM_19850
COG0531 Amino acid transporters.
       0.536
TreY
COG3280 Maltooligosyl trehalose synthase.
 
   
 0.514
RAM_13180
Maltooligosyltrehalose trehalohydrolase; COG0296 1,4-alpha-glucan branching enzyme.
 
  
 0.509
RAM_19840
Hypothetical protein; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
       0.493
RAM_23790
COG0668 Small-conductance mechanosensitive channel.
 
    0.481
RAM_19865
Hypothetical protein.
       0.462
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.