STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19875Integral membrane protein; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase. (134 aa)    
Predicted Functional Partners:
RAM_19905
Integral membrane protein.
 
     0.733
RAM_19895
COG4320 Uncharacterized protein conserved in bacteria.
 
     0.597
RAM_19880
COG2909 ATP-dependent transcriptional regulator.
 
     0.561
RAM_20470
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.550
RAM_19900
COG4803 Predicted membrane protein.
 
     0.520
RAM_27315
Diacylglycerol kinase, catalytic region; COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase.
 
     0.501
RAM_19850
COG0531 Amino acid transporters.
  
     0.486
RAM_19860
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.471
RAM_19890
Hypothetical protein.
       0.459
RAM_13635
COG4320 Uncharacterized protein conserved in bacteria.
 
     0.428
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.