STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19880COG2909 ATP-dependent transcriptional regulator. (869 aa)    
Predicted Functional Partners:
RAM_19875
Integral membrane protein; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
 
     0.561
RAM_18490
Polymorphic outer membrane protein.
  
     0.453
RAM_45850
LGFP repeat-containing protein probably involved in peptidoglycan biosynthesis; COG2133 Glucose/sorbosone dehydrogenases.
  
     0.451
RAM_19885
Hypothetical protein.
       0.444
RAM_06845
Hypothetical protein.
  
     0.436
RAM_19890
Hypothetical protein.
       0.429
RAM_05995
COG1141 Ferredoxin.
  
     0.404
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.