STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GalA-8COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases. (435 aa)    
Predicted Functional Partners:
Neu
COG4409 Neuraminidase (sialidase).
     
  0.900
LacZ-4
COG3250 Beta-galactosidase/beta-glucuronidase.
 
  
 0.747
LacZ-5
COG3250 Beta-galactosidase/beta-glucuronidase.
 
  
 0.739
LacZ-3
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.723
RAM_19950
COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.712
RAM_19945
COG1175 ABC-type sugar transport systems, permease components.
  
  
 0.682
MalZ-2
Alpha-glucosidase; COG0366 Glycosidases.
     
 0.676
RAM_19940
COG0395 ABC-type sugar transport system, permease component.
  
    0.676
MalZ-3
Alpha-glucosidase; COG0366 Glycosidases.
     
 0.676
MalZ-4
Alpha-glucosidase; COG0366 Glycosidases.
     
 0.676
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.