STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19950COG1653 ABC-type sugar transport system, periplasmic component. (421 aa)    
Predicted Functional Partners:
RAM_19940
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.906
RAM_19945
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.904
MsmF
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.764
RAM_16000
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.752
RAM_43175
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.744
RAM_09415
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.724
RAM_35495
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.718
RAM_38125
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.716
GalA-8
COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases.
 
    0.714
RAM_31115
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.714
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.