STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_19995Lipase; COG1073 Hydrolases of the alpha/beta superfamily. (443 aa)    
Predicted Functional Partners:
RAM_17355
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.668
RAM_20855
Cellulose-binding protein.
  
     0.624
RAM_29360
COG0425 Predicted redox protein, regulator of disulfide bond formation.
  
     0.568
RAM_20005
Polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 
 0.521
RAM_20000
Hypothetical protein.
       0.516
RAM_33230
Cell surface-attached carbohydrate-binding protein.
  
     0.468
RAM_35460
Mycodextranase.
 
    0.465
LacC
Tagatose 6-phosphate kinase; COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB).
  
    0.452
FbaA
Fructose-bisphosphate aldolase, class II; COG0191 Fructose/tagatose bisphosphate aldolase.
       0.447
RAM_46895
Hypothetical protein; COG2730 Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.434
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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